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Articuno will disappear once you defeat it in HeartGold however you can bring it back in its place within Seafoam Island by defeating the Elite 4 and Lance regardless of whether you've already defeated them or not. Defeating Lance will activate the regeneration process for any Pokémon such as Articuno that is either considered a Legendary or a one-off Pokémon such as Sudowoodo.

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Q: What happens if you fainted Articuno in Pokemon HeartGold?
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Related questions

What happens if Kyogre in Pokemon Heartgold fainted?

Just take him to a Pokemon center.

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