You can only get Groudon on soul silver, and you get him by first obtaining the national pokedex then talk to Mr.Pokemon, after that had to route 47, the embedded tower. <----- wrong. you have to get one at EMBEDDED TOWER. imma try to figure it out k?
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First you need to gave caught the kyogre or groudon in heartgold or soulsilver. Then go to professor oak's lab put the kyogre first or groudon
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The cool legendaries you can get in Soulsilver/heartgold are the following: Lugia, Ho-oh, Raikou, Entei, Suicune, Articuno, Moltres, Zapdos, Mewtwo, Latias, Latios (Latios in Soulsilver & Latias in Heartgold), Kyogre, Groudon, Rayquaza (Kyogre in Heartgold, Groudon in Soulsilver & Rayquaza if you have both).
You have to have both Kyogre and Groudon. You get the Red Orb from Mr. Pokemon to catch Groudon in the Embedded Tower. In addition, the Groudon has to be from SoulSilver and the Kyogre must be from HeartGold. Show them to Professor Oak for the Jade Orb to awaken Rayquayza.
After catching Kyogre, obtain a Groudon from a friend with Pokemon SoulSilver. You only need the Groudon temporarily. Talk to Professor Oak with both in your party, and Professor Oak will give you the Jade Orb to catch Raquayza.