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If you are playing the original Gold game:

You caught either a Missingno. (I'm pretty sure you didn't) or you caught the Red Gyarados. It's sad, but the Red Gyarados in Gold has a horrible glitch in it that has a chance of doing what you just described.

If you are playing Heart Gold:

I have no idea what happened. The Gyarados glitch does not occur in Heart Gold.

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Q: You play Pokemon gold you save the game but the next time you play it your file is gone?
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