no man u should paralize lugia then et him to red health then use ultra balls or dusk balls
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you should use your master ball on anything that's rare (not like a shiny) you could use it on lugia, or you could just use hypnosis or somethin then use some ultra balls. if u have the arceus from the movie, do the event and use the master ball on either dialga, palkia, or giratina ( depends on what you choose)
To find Lugia enter the Whirl Island Caves at the top-right island, then it should be pretty easy from there (if you're stuck use youtube or similar.)
Go catch Lugia in Whirl Islands! WARNING: Unless you are an EXTREME Lugia fan, don't use a Master Ball on it, unless it is Level 70. Advice: Use Master Ball on Ho-Oh when you get to it. I caught Lugia in a Fast Ball and Latios in an Ultra Ball.
well theres a couple different ways to do this. you could use your masterball and catch him that way, however i would save your masterball for going after hoho. the other way is to use a Pokemon that knows mean look, knock him down into the red without making him faint, then use ultra balls (warning: you may go through alot of ultra balls until he submits. same rule applies to the three ledgendary dogs (suku, enti, and ruku)
go to the 2nd whirlpool island. go in. use flash (if you dont have it just simply go to the goldenrod city deparment store and buy it) go to the left side. go down the ladder and and keep on going until u get to the other ladder and go down keep on walking and go down to the last cave. there you will summon lugia and try (if you still have your masterball and have not been a idiot like me and wasted it on suicine,riakuo,or entei congradulations you will cath lugia) to cach lugia