After getting Silph Scope you go to Lavender Town and go to the Pokémon Tower. Then you go to the last floor, and thanks to the silph scope you are able to know the identidy of the guardian Pokemon, it´s a cubone if i´m not mistaken. After you defeat the guardian Pokemon you will find team rocket and then you save Mr. Fuji.
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You get the flute in the Pokemon tower after you get the silph scope.
There is no silph scope in Silver, as Lavender Tower doesn't exist anymore.
saffron city
There isn't one.
The SILPH SCOPE is an item used to see the Pokemon "GHOSTs" in POKEMON TOWER (which is located near the entrance of LAVENDER TOWN) that appear randomly in the upper levels of the tower. You will need the SILPH SCOPE to reach the highest level of POKEMON TOWER. This item is fairly easy to obtain, as long as your Pokemon are in good health and can successfully protect you. And that, my fellow Pokemon fan, is why you need the SILPH SCOPE.