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I'm not sure. But, if you want an Azure flute, go for it.
While the Azure Flute does exist in HeartGold and SoulSilver's files, the Azure Flute cannot be traded to these games. There is also no event to capture Arceus in these games, thus trading the Azure Flute would have no point.
You cannot get the Azure Flute in HeartGold. The Azure Flute is only capable of being used in Pokemon Diamond or Pearl. The Azure Flute can only be obtained by an event of some sort in Diamond and Pearl.
where to find a azure flute without action replay and cheating in pokemon platinum
there is no such thing as an azure flute in emerald, only in diamond