You cant, you only get one shot, if you kill it you can only get it from trading
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If you've saved before attempting to capture it, DO NOT save it after you kill it. Instead, try again. If you didn't save before killing it or saved after you killed it, you have to transfer from FireRed or LeafGreen, or trade with someone who does have it.
Then he is gone and you will have to trade with someone else to get him.
It is gone. If you saved the game after you killed it then it is gone forever.
Switch it off & try again by not saving save the game outside of this Thingymawhat place.
If you defeated Zapdos, you can never get him again, unless if you trade from Pokemon LeafGreen or FireRed. If you did defeat him, you should have saved the game before pressing the button, A, on it. That way, if you defeat him, you can just turn off the game and turn it back on and you will find Zapdos still there! ed by: QWERTY