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sub- simply means under , but hypo- is to minimize a thing , like "hypofunction" which means reduction in function , an other e.g. is hypothalamus in the human brain , it means a small thalamus , thalamus is an other structure in the brain but larger than the hypothalamus , so that the idiom hypothalamus , I think "hypo-" is used wrong in medicine , in the meaninig of under , like " hypoglossal nerve" and the wanted meaning is " under the tongue " and most medical references talk about hypothalamus as it is under the thalamus not as a structure smaller than the thalamus , and you don't find "hypo" in the medical dictionary in the meaning of "under " but in the meaning of "reduction or smaller " .

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