It all depends on how you raise them but in retrospect seeing as how swampert is part ground type I'd say wailord is stronger.
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Swampert or Wailord.
it depends on which lvl your Pokemon is. A lvl 100 swampert is stronger than a lvl 99 sceptile, but a lvl 100 sceptile is stronger than a lvl 99 swampert. If you want your Pokemon to be stronger than the other, you jut have to train it a few lvls higher. But sometimes a Pokemon has a special move. they can defeat Pokemon of many lvls higer with that. well swampert is water ground and sceptile is grass so if you matched them up to battle each other no crap im going with sceptile 4 times effective to swampert all tho i love swampert blaziken and sceptile but i prefer grass Pokemon its just me.
Kyogre ( cause it is a legendary) then there is other strong ones that you can get pre-elite 4 such as Walrein, Golduck, Swampert( starter fully evolved), Starmie, Milotic ( very rare) Lanturn, Wiscash, Kingdra, Gyrados, Wailord, Ludicolo, Crawdunt Any water pokemon that can evolve is potentially a strong pokemon to use. Using base stats Kyogre is the best with 670 and then Milotic,Gyrados,Kingdra= 540 Swampert= 535 Wailord, Golduck= 530
swampert ex is super rare
wailord is in undella bay