Definitely Kyogre. I have Pokemon Emerald and Fire Red so I've seen both. Kyogre is uglier but he's at level 70 while Suicune is prettier but she's at level 50. So do you're self a favor and Kyogre insted.
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kyogre or suicune or palkia. they're the best water types u need arceus to get palkia.and u just need to chase suicune in and HG or SS game.and kyogre i think is the best personaly. after you have all 16 badges u can talk to mr.pokemon and he will give you the blue orb to catch kyogre
Raikou is best because entei and suicune are fegget Raikou all the way 2 reasons He is way cooler then Entei and Suicune. Number 2 he could whoop Suicune and Entei in a battle So suicune and entei are good but overall raikou is better
Defeating Kyogre in Pokémon Sapphire and Pokémon Emerald will mean that it will not return however it will return if you defeated it in Pokémon HeartGold. In Pokémon HeartGold, there's a regeneration system that will regenerate all 1-off Pokémon such as Kyogre, Entei, Suicune and Raikou after defeating Lance.
The cool legendaries you can get in Soulsilver/heartgold are the following: Lugia, Ho-oh, Raikou, Entei, Suicune, Articuno, Moltres, Zapdos, Mewtwo, Latias, Latios (Latios in Soulsilver & Latias in Heartgold), Kyogre, Groudon, Rayquaza (Kyogre in Heartgold, Groudon in Soulsilver & Rayquaza if you have both).
Lugia is cause it's in the cover box but there are others as well like: Ho-oh, raiku, entei, suicune, zapdos, moltes, articuno, mewtwo, latios, and groudon (that's all i know and caught but there may be more) In heart gold there is latias and kyogre and if you trade either kyogre or groudon you can get rayquaza