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NOTE: THIS IS ONLY FOR HEARTGOLD! (SoulSilver is different)

Lugia Lv.70- Whirl Islands- knows Aeroblast, Punishment, Ancient Power, Safeguard

Ho-oh Lv.45- Bell Tower- knows Extrasensory, Sunny Day, Fire Blast, Sacred Fire- holds Sacred Ash

Suicune Lv.40-Burnt Tower (not the first time though =( )- knows Rain Dance, Gust, Aurora Beam, Mist

Mewtwo Lv.70- Cerulean Cave- knows Psycho Cut, Amnesia, Power Swap, Guard Swap

Kyogre Lv.50-Embedded Tower- knows Aqua Ring, Ice Beam, Ancient Power, Water Spout

Rayquaza Lv.50-Embedded Tower (after giving Prof. Oak Kyogre AND GROUDON in exchange for the Jade Orb)- knows Rest, Airslash, Ancient Power, Outrage

you can only get 2/3 of the following (because they are made by Arceus)

Palkia Lv.1-Sinnoh Ruins- knows Dragonbreath, Scary Face- holds Lustrous Orb

Dialga Lv.1-Sinnoh Ruins- knows Dragonbreath, Scary Face- holds Adamant Orb

Giritina Lv.1-Sinnoh Ruins- knows Dragonbreath, Scary Face- holds Griseous Orb

the next 1 can only be obtained if you downloaded the Enigma Stone Wi-Fi Event =(

Latios Lv.40-Pewter City- knows Protect, Refresh, Luster Purge, Zen Headbutt

The next 3 Pokemon can only be found roaming in tall grass

Latias Lv.35-Roaming in tall grass- knows Dragonbreath, Water Sport, Refresh, Mist Ball

Raikou Lv.40-Roaming in tall grass- knows Roar, Quick Attack, Spark, Reflect

Entei Lv.40- Roaming in tall grass-knows Roar, Fire Spin, Stomp, Flamethrower

If you need further details then look it up.

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