It works like a repel it reflects wild pokemon.
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The white flute I think attracts Pokemon. Later in the game you can also receive a black flute. The black flute on the other hand repels Pokemon.
Blue Flute- Awakens Pokemon Red Flute- Gets rid of infatuation Yellow Flute- Clears confusion Black Flute- Repels wild Pokemon White Flute- Attracts wild Pokemon And that's it.
You get the black flute when you reach the smashed wall and Looker gives you it.
It can repel wild Pokemon upon use.
They heal certain Status afflictionsBlue = SleepRed = AttractionYellow = ConfusionBlack = Acts like repelWhite = The opposite of Black (lures)For more info = bulbapedia.bulbagarden.net/wiki/Flute