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You have to go to the sky pillar (near pacifidlog town), and you have to use a match bike to go to the top of the tower to awaken Rayquaza.

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Q: How do you solve problem in sootopolis city in Pokemon emerald?
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How do you solve Groudon and kyogre emerald?

Well first you have to go to the sky pillar and then you will meet Wallace there and then you will have to go up the sky pillar and wake up raquaza and then you would have to get out that place and then fly back to sootopolis city and then your problem is fixed good luck.=).

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