you go back to Mt Silver, if you cannot find him there, goto his house in Pallet Town, he should be there, hope this helps
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He disappears until you beat the Pokemon league again.
You can beat the Elite Four again, and battle Red again. If you beat lance and the elite four and Lance again then you are able to face Red at mt silver.
First off, the Red Orb has nothing to do with the Ruins of Alph on Pokemon Heartgold or Soulsilver. The Red Orb is used at the Embedded Tower to summon Groudon. This Pokemon can only be obtained in Pokemon Soulsilver.
Yes, after you beat the Pokemon league the second time, every time you beat the Pokemon league again red will reappear at the platform on the top of mount silver. But red's Pokemon will be a little stronger every time you re-battle him.
you get it after catching or defeating red gyarados