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Just keep Attacking till it is defeted.

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Q: How do you defeat moltres in Pokemon Mystery Dungeon?
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After you defeat the elite 4 as well as the champion Gary the only new area that opens up is the mystery dungeon in Cerulean city. In this dungeon, you can find rare and high level pokemon.


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How do you catch moltres in leafgreen?

I used a Blastoise that knew Hydro Cannon and a Flareon, and 50 ultra balls (I ended up only using 4 of them) First, the most important thing to do....Get to Moltres and SAVE! After that, engage it into battle. Use Hydro Cannon on Moltres and hope Moltres uses Endure. If not, reset the game by pressing A+B+Start+Select until it uses Endure. It should only have one health left. If you have a Pokemon that can paralyze it then use it. After that, switch to a Pokemon that has the ability Flash Fire. (Moltres only know 2 attack moves and they are both fire, so it can't defeat it) I suggest Flareon. After doing all that, throw ultra balls until Moltres is caught.


How do you battle Groudon in blue mystery dungeon?

after you have done the bit where you meet ninetales in the game... there will be alot of earthquakes! first alakazam's team goes to defeat groudon but fails! as they don't return... then team rumblerock's golem, team hydro's blastoise and team constrict's octillary, goes to defeat groudon... but after a few days they couldn't even get to him! so they come back as failure's and half dead... then you and your partner volentere to go to save alakazam's team and defeat groudon! then you get access to groudon's dungeon.. then you complete the dungeon and... well... battle groudon! Hope this helped