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Nope you do not have the option to turn off Pokémon following you in Pokémon HeartGold or SoulSilver. If you go into Professor Elm's lab, a small house, a small area with a big Pokémon then it can't go in so you won't have a Pokémon following you in those places and if you start the game you won't have a Pokémon so that is the time and places Pokemon can't follow you, also Pokémon won't follow you while you're riding your bike.

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Q: Do you have the option to turn off Pokemon following you in Pokemon HeartGold and SoulSilver?
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