yes because the yellow flash also known as the fourth hokage dated his mom and she had his first son then they broke up and the yellow flash found naruto's mom and she had his 2nd son okay.
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You find out in one manga that one of the Akatsuki members (Tobi if memory serves right) had talked about Nagato (Pain) and had said "Who would've guessed that the Uzumaki's trademarked red hair has been used so much it turned snow white?". Because, remember? Pain had orange hair, yet Nagato (the real pain) had red hair!
He does not have a middle name.
Nagato in naruto is pein.Nagato became pein in the 2nd great ninja war.Jiraiya took him,yahiko,and konan as his students.Now nagato is the akatsuki member known as pein.Pein is not the lleader of the akatsuki though.
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After Konan died Madara (Tobi) found Nagato's body and he transplanted Nagato's rinnegan into his left eye.