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Herpes doesn't affect your cycle. I have been trying to find this answer for a long time. Here is the website where I received the information I am sharing:

http://www.healthcentral.com/genital-herpes/c/86/16378/herpes-cycle/

This article also talks about if your cycle changes (less or heavier) you need to see a doctor, so if you can...do it! Good luck!

Hope that helps!

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Q: Can herpes affect your menstrual cycle?
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