TaqI's restriction site is:
TCGA
AGCT
The restriction site of Hae III is GGCC. It cuts between the G and the C. This produces blunt ends.
Hae III cuts at the site GGCC. It creates blunt ends - meaning a clean cut. This is found between the G and C.
A restriction enzyme will cut a DNA sequence only if it matches the specific recognition sequence of that enzyme. These enzymes are highly specific and will cleave the DNA at a particular site when the target sequence is present in the DNA molecule.
A restriction enzyme (also known as restriction endonuclease) is protein which cuts DNA up at specific sequences (called restriction sites) in a genome. For example, the commonly used restriction endonuclease EcoRI recognizes every DNA sequence GAATTC and cuts at the point between the guanine and the adenine in that sequence, forming blunt ends (or straight, even ends). Interestingly and coincidentially, the restriction site for most restriction enzymes are genetic palindromes (the sequence reads exactly the same backwards on the complementary strand). In the case of EcoRI, the two complementary DNA strands for the restriction site are:5'-- GAATTC --3'3'-- CTTAAG --5'After this DNA sequence is cut, it might look something like this:5'-- G AATTC --3'3'-- C TTAAG --5'
You use the same enzyme inn order to get the same restriction and binding sites.
The restriction site of Hae III is GGCC. It cuts between the G and the C. This produces blunt ends.
Hae III cuts at the site GGCC. It creates blunt ends - meaning a clean cut. This is found between the G and C.
The restriction enzyme EcoR1 specifically cuts the DNA sequence at the recognition site GAATTC.
A palindrome in the context of a restriction enzyme site refers to a sequence of DNA that reads the same forward and backward. Many restriction enzymes recognize and cut DNA at palindromic sequences. This characteristic allows the enzyme to bind symmetrically to both strands of DNA.
The specific DNA sequence recognized by the EcoRI restriction enzyme, known as the EcoRI cut site, is 5'-GAATTC-3'.
Template Sequence
The restriction site is a sequence of DNA that is recognized by an endonuclease, or a protein that cuts DNA, as a site at which the DNA is to be cut. This cutting happens when restriction enzyme cleaves nucleotides by hydrolyzing the phosphodiester bond between them.
Raising the temperature to 42 degrees can denature the enzyme, changing its shape and disrupting its active site. This can prevent the enzyme from functioning properly, halting the restriction process.
Restriction enzymes cut DNA at specific sites called restriction sites. These restriction sites are typically 6 - 8 nucleotides in length and have a defined set of nucleotide bases. For example, the restriction enzyme Eco R1 cuts at the site: AGGTTC. Therefore, if the target DNA contains the above sequence, Eco R1 is able to cut it within the restriction site. Hence, by looking into the target site and which restriction enzymes are being used, on can make an accurate estimate of where the target DNA will be cut
Such an enzyme is called a restriction endonuclease
Restriction enzymes are made by cells to protect their own DNA from being cut. These cells produce a modification enzyme that adds a methyl group to specific sites on their own DNA sequence, which prevents the restriction enzyme from cutting. This process is known as "methylation protection."
The restriction enzyme used to cut the DNA was EcoRI.