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No, "ecology" is not capitalized when used in a sentence unless it is at the beginning of a sentence or part of a title.
Yes, "carbon dioxide" should be capitalized in a sentence as it is a proper noun.
No, the subject "science" is not capitalized unless it is at the beginning of a sentence or part of a title.
Studying ecology helps us understand how living organisms interact with each other and their environment.
Branches of ecology include population ecology (study of how populations of organisms interact with their environment), community ecology (study of interactions between species in a given area), ecosystem ecology (study of the flow of energy and matter through ecosystems), and conservation ecology (study of how to protect and preserve biodiversity).
When used to describe our sun it is a name, which makes it a proper noun and therefore should be capitalized. When used in reference to the many bright lights we see at night it is simply a noun and therefore not capitalized.