Flexible Parametric Survival and Multi-State Models

AICc | Second-order Akaike information criterion |

AICc.flexsurvreg | Second-order Akaike information criterion |

AIC.fmsm | Akaike's information criterion from a flexible parametric... |

ajfit | Aalen-Johansen nonparametric estimates comparable to a fitted... |

ajfit_flexsurvmix | Forms a tidy data frame for plotting the fit of parametric... |

ajfit_fmsm | Check the fit of Markov flexible parametric multi-state... |

augment.flexsurvreg | Augment data with information from a flexsurv model object |

basis | Natural cubic spline basis |

bc | Breast cancer survival data |

BIC.flexsurvreg | Bayesian Information Criterion (BIC) for comparison of... |

bootci.fmsm | Bootstrap confidence intervals for flexsurv output functions |

bos | Bronchiolitis obliterans syndrome after lung transplants |

coef.flexsurvreg | Extract model coefficients from fitted flexible survival... |

coxsnell_flexsurvreg | Cox-Snell residuals from a parametric survival model |

dot-hessian | Numerical evaluation of the hessian of a function using... |

dot-hess_to_cov | helper function to safely convert a Hessian matrix to... |

flexsurvmix | Flexible parametric mixture models for times to competing... |

flexsurv-package | flexsurv: Flexible parametric survival and multi-state models |

flexsurvreg | Flexible parametric regression for time-to-event data |

flexsurvrtrunc | Flexible parametric models for right-truncated, uncensored... |

flexsurvspline | Flexible survival regression using the Royston/Parmar spline... |

fmixmsm | Constructor for a mixture multi-state model based on... |

fmsm | Construct a multi-state model from a set of parametric... |

GenF | Generalized F distribution |

GenF.orig | Generalized F distribution (original parameterisation) |

GenGamma | Generalized gamma distribution |

GenGamma.orig | Generalized gamma distribution (original parameterisation) |

get_basepars | Evaluate baseline time-to-event distribution parameters given... |

glance.flexsurvreg | Glance at a flexsurv model object |

Gompertz | The Gompertz distribution |

hazard | Hazard and cumulative hazard functions |

hr_flexsurvreg | Hazard ratio as a function of time from a parametric survival... |

lines.flexsurvreg | Add fitted flexible survival curves to a plot |

Llogis | The log-logistic distribution |

logLik.flexsurvreg | Log likelihood from a flexsurvreg model |

meanfinal_fmixmsm | Mean time to final state in a mixture multi-state model |

mean_flexsurvmix | Mean times to events from a flexsurvmix model |

means | Mean and restricted mean survival functions |

model.frame.flexsurvmix | Model frame from a flexsurvmix object |

model.frame.flexsurvreg | Extract original data from 'flexsurvreg' objects. |

msfit.flexsurvreg | Cumulative intensity function for parametric multi-state... |

nobs.flexsurvreg | Number of observations contributing to a fitted flexible... |

normboot.flexsurvreg | Simulate from the asymptotic normal distribution of parameter... |

pars.fmsm | Transition-specific parameters in a flexible parametric... |

pdf_flexsurvmix | Fitted densities for times to events in a flexsurvmix model |

pfinal_fmsm | Probabilities of final states in a flexible parametric... |

p_flexsurvmix | Transition probabilities from a flexsurvmix model |

plot.flexsurvreg | Plots of fitted flexible survival models |

plot.standsurv | Plot standardized metrics from a fitted flexsurv model |

plot_survtrunc | Plot nonparametric estimates of survival from right-truncated... |

pmatrix.fs | Transition probability matrix from a fully-parametric,... |

pmatrix.simfs | Transition probability matrix from a fully-parametric,... |

ppath_fmixmsm | Probability of each pathway taken through a mixture... |

predict.flexsurvreg | Predictions from flexible survival models |

probs_flexsurvmix | Probabilities of competing events from a flexsurvmix model |

qfinal_fmixmsm | Quantiles of the distribution of the time until reaching a... |

qgeneric | Generic function to find quantiles of a distribution |

quantile_flexsurvmix | Quantiles of time-to-event distributions in a flexsurvmix... |

reexports | Objects exported from other packages |

residuals.flexsurvreg | Calculate residuals for flexible survival models |

rmst_flexsurvmix | Restricted mean times to events from a flexsurvmix model |

rmst_generic | Generic function to find restricted mean survival time for... |

simfinal_fmsm | Simulate and summarise final outcomes from a flexible... |

sim.fmsm | Simulate paths through a fully parametric semi-Markov... |

simfs_bytrans | Reformat simulated multi-state data with one row per... |

simt_flexsurvmix | Simulate times to competing events from a mixture multi-state... |

simulate.flexsurvreg | Simulate censored time-to-event data from a fitted... |

standsurv | Marginal survival and hazards of fitted flexsurvreg models |

summary.flexsurvreg | Summaries of fitted flexible survival models |

summary.flexsurvrtrunc | Summarise quantities of interest from fitted flexsurvrtrunc... |

survrtrunc | Nonparametric estimator of survival from right-truncated,... |

Survspline | Royston/Parmar spline survival distribution |

Survsplinek | Royston/Parmar spline survival distribution functions with... |

tidy.flexsurvreg | Tidy a flexsurv model object |

tidy.standsurv | Tidy a standsurv object. |

totlos.fs | Total length of stay in particular states for a... |

totlos.simfs | Expected total length of stay in specific states, from a... |

unroll.function | Convert a function with matrix arguments to a function with... |

vcov.flexsurvreg | Variance-covariance matrix from a flexsurvreg model |

WeibullPH | Weibull distribution in proportional hazards parameterisation |

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