Well the best Pokemon would be.
Infernape, Rhyperior, Scizor, Kabutops, Feraligatr, Luxray, Rampardos, Staraptor, Garchop and Lucario
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Best non-legendary water pokemon would be Gyarados. Best legendary water pokemon is Kyogre.
Zekrom is the best electric legendary Pokemon period. Its not a opinion, its a dead fact.
The best legendary fire type is ho-oh. The best non-legendary fire type Pokemon is charizard.
suicune is top legendary dog just play Pokemon crystal and you'll see.
Well there is no such thing as the best legendary, everybody has his own tastes. The higher leveled legendary you find here is Mewtwo.