If you run away, you have to beat the elite four. Then, go to the burned tower and suicune will be waiting at the bottom for you. go to serebii.net for a more detailed "how to".
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yes but you have to beat the elite 4 and ash again
Suicune is a hard Pokemon to catch Suicune will move around diffrent places. You normally catch Sucune at level 40 use your map to try and find Suicune on your pokegear. It is hard but you will get there
No, you cannot breed Legendaries with the exception of Manaphy.
Your Suicune in Pokemon SoulSilver glows blue when it isn't a shiny as a sign of rebellion.