Probably a HUGE chunk of lava. Or glitch.
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The red dot is just where you were you walked/flew to last
If you add a memo to a town on your Pokegear map, a red dot will appear on it. That is the reason, you must have something written on Cherrygrove City.
The last badge is off the coast of cinnabar it is the red dot in the left corner of the map
The red dot on the telescope is actually another lighthouse
Errr.... What do you mean by "red" on the pokedex map? Oh wait... It means the location of the pokemon? I think so... :3 Well, good luck!~FIRERED10~a.k.a.~EMPTY EMBER~(Flamerz08)