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After you beat the champion in Pokemon Emerald, you can ride the ferry. Unlike in the Ruby and Sapphire versions, in Emerald you can travel to something called the "Battle Frontier." I don't want to give any spoilers for those who haven't finished the game, so all I will say is that it is worth the wait! Also, you can continue catching the legendary Pokemon and other Pokemon.

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Q: What do you do after you beat the champion in emerald?
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Beat them and the champion

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because you beat the game. but you can still train. and you can get more legendaries.

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train some electric Pokemon or just level up your Pokemon loads

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