In all honesty, it is up to you. The Helix Fossil is an Omanyte, while the Dome Fossil is a Kabuto. Personally, I would suggest the Dome Fossil, just because I love Kabuto.
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helix, dome is better in fire red
If you choose the Helix Fossil it can be revived into an omanyte. The Dome Fossil can be revived into a kabuto. I suggest you pick based on what pokemon you like better.
Kabuto is in the dome fossil and Omanyte is in the helix fossil.
It depends on what you prefer. The dome fossil turns into Kabuto, which has a better Attack and Sp. Attack. The Helix fossil turns into Omanyte, which has a better Defence and Sp.Defence. So, it all depends on what you want! Defence, or Offence!
There is no ar code to get omantye in fire red. In Mt. Moon you will find a scientist and he will give you a choice of two fossils, the helix fossil or the dome fossil. if you want Kabuto choose the dome fossil, and if you want omantye choose the Helix Fossil.