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In Pokémon HeartGold, you can find the White Flute in Route 47 in the Johto region.
Give them a Bitter berry, play the poke flute,or give them an awakening
You cannot get the Azure Flute in HeartGold. The Azure Flute is only capable of being used in Pokemon Diamond or Pearl. The Azure Flute can only be obtained by an event of some sort in Diamond and Pearl.
While the Azure Flute does exist in HeartGold and SoulSilver's files, the Azure Flute cannot be traded to these games. There is also no event to capture Arceus in these games, thus trading the Azure Flute would have no point.
It makes wild Pokemon appear more often :( or :)