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You Can. When you knock out a Pokemon, the Pokemon has fainted and cannot be captured Until you re beat the pokemon league. In the case of one time showing Pokemon (legendaries just like Rayquaza), if you knock it out, you can capture it without restarting the game and going all the way back to the point to capture it. I personally always save the game before I ever battle a legendary Pokemon, and if i successfully capture the Pokemon, i save the game right after i get it to avoid an accidental loss of data.

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Q: How do you catch Rayquaza if you kill it?
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Pokemon sapphire what happens if you kill Rayquaza when you were trying to catch him?

nothing


How do you catch Rayquaza but before defeat the E4 in Pokemon Ruby?

Well, you have to beat the E4 enable to catch Rayquaza and when you beat the E4 you need a master ball of a lot of ultra ballsand save the game in front of him!!! If you run, die, or kill him you won't beable to try again. I hope this was helpful heres a tip the rayquaza is black


What do you do after beating the elit four?

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Where to catch Rayquaza on Pokemon Indigo?

You can catch Rayquaza in the map called "Blackthorn City".


How do you catch Rayquaza in crystal?

Rayquaza isn't in Crystal.


Can you catch Rayquaza in Pokemon Black?

No, you cannot catch Rayquaza in Pokémon Black.


How do you catch Rayquaza in xd?

Rayquaza is not avaliable in Pokemon XD


How do you get Rayquaza on dimand version?

You cannot catch rayquaza in diamond


How do you catch Rayquaza in Pokemon Black?

You cannot catch a Rayquaza in Pokémon Black, you will have to either transfer it from a previous game or you can also trade with someone for a Rayquaza.


Can you catch Rayquaza?

Yes.


How do you catch Rayquaza platinum?

no


Do you need to catch Rayquaza?

It is not necessary to catch Rayquaza. It's an optional legendary Pokemon that you can find at Sky Pillar.